Protein Info for SO3310 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details PF09976: TPR_21" amino acids 15 to 205 (191 residues), 208 bits, see alignment E=3e-65 PF13432: TPR_16" amino acids 95 to 151 (57 residues), 28.9 bits, see alignment E=3.5e-10 PF14559: TPR_19" amino acids 98 to 155 (58 residues), 33.9 bits, see alignment E=8e-12 PF13174: TPR_6" amino acids 127 to 154 (28 residues), 19.4 bits, see alignment 3.1e-07

Best Hits

Swiss-Prot: 36% identical to YA57_AGGAC: UPF0070 protein 1057 (1057) from Aggregatibacter actinomycetemcomitans

KEGG orthology group: None (inferred from 100% identity to son:SO_3310)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EC34 at UniProt or InterPro

Protein Sequence (206 amino acids)

>SO3310 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MEIYSTEEQQVDAIKQFWKDYGISIGIGAVVGLGGLYGWNTYSDMKIEKAEEASQAFQAL
TTKSSDEVAMLAGVAEFSKNYDQKGYQALLDLIVAKTAVEAKDFPKAEEALKKVIAAKPG
AGLDTIATLRLARIQAEQGQVDTALATLEQVTDKAFLAQREELKGDFFVRQGQADKAKTA
YQAAMDNGGVVTSPALKIKLDNLNQA