Protein Info for SO3306 in Shewanella oneidensis MR-1

Annotation: sensor histidine kinase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1171 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 759 to 778 (20 residues), see Phobius details PF07494: Reg_prop" amino acids 55 to 77 (23 residues), 21.1 bits, see alignment (E = 4.8e-08) PF07495: Y_Y_Y" amino acids 693 to 752 (60 residues), 42.5 bits, see alignment 9.7e-15 PF02518: HATPase_c" amino acids 934 to 1039 (106 residues), 84.7 bits, see alignment E=1.3e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3306)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EC38 at UniProt or InterPro

Protein Sequence (1171 amino acids)

>SO3306 sensor histidine kinase (NCBI ptt file) (Shewanella oneidensis MR-1)
MVRSNVGSQCYQKRLTLMSRCYYLSIFLVFWSFIVSAQAKAAYYPLAQQISSENGLSQNV
VLALEEDNYGRIWVGTQDGLNLINNNELLVFRRDQAEHRLSGTVITDLTLDQQGRLWVAS
DVGLDYIDTTTLESHVITLNQSISHMLLHTEQTIFYLSSQKLYQFQINTGQVQEVKLPEL
FQIINTLGSYDEQHLLLIGPNGFGVLNLSTGDVTPLQPDIPAGTYKASTISAERIWISQM
EQGLYSCNLQGLDCRTYSKANQKLPTNNIAQIYQQDTALFLATDKGIGRLDLITDKLEWI
YPHSQNNAYQASRIARNLIPAKSGDIFVGTFNGLYRIPNTYKEVQAFNTGIGGYPSNQLA
VNKVMLNGQERLVIAQPDKLTLWTLDASILRLYREYDYPQGFVPTNLFVDGGDIYLSSLT
NNNLILTPHNGAFTSLEERFAQLGNVQLFNMNQPQEDIRVFHLLTSMKVYQQRQNKWQLL
WEKPFLTGSATAEYWQGRLYVASYQNGLMSASMDNDWQKPQQWQQHHGLGIAINLFAQKD
KLYVLTANLGLFQVDSSSPISITQVSSRDKLASQTLVCAIRDHNGQLILSSHKGLVIFDS
QQESLIYLSSLQGTHEQEFSQFSCGTLNNVPYFAGERGLTLVFDSQAIKSPAPQITWTHL
DVDGLTYRLGSSGTGKLTAPEFIRLHFVATPSDLPKQASYRYRIKSLSDEWVELKSSFIP
MINLRPGSYQVELESRDFSGRSSPIALATLEIAPGFWESSLAISLYIFIGLVVIALLVSH
RIKADRSLLALEVEKNRHQQDYSRKLEHEVQIRTNELAQKKEEAEEANTAKTRFIAAASH
DLKHPIGLIRLQLEQIEDNKLSYKINTSLSFLEQLVSSIVELSRLDARVLVPQISSFDLG
IFIAKVAEEHLTLAQSFRLNLMTDIKSDVWVASDSLLLRRVIDNILSNAIKISDPDTSVS
LSVCQERQHAVIEVIDQGPGMTQQMQAELFTPFKRWTSRYQGSGLGLSVVKGIADLLGIS
LSIRSTLGEGTQFTLKLPLIDKPTFSHIEDEAAIFHLGIVEDDYEQLNHLCSSLMVRGIK
VSGYRHAISLLQDKTAIFDAILSDIDIGTEQDGLAYLVEYRQRLTDAKPLIYMSGNPEAG
LRIPSQTDLFFFSKPLKLGKLMWLLNQSKRK