Protein Info for SO3302 in Shewanella oneidensis MR-1

Annotation: serine protease, subtilase family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1287 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 1260 to 1277 (18 residues), see Phobius details PF00082: Peptidase_S8" amino acids 196 to 671 (476 residues), 158.1 bits, see alignment E=4.9e-50 PF02225: PA" amino acids 478 to 551 (74 residues), 25.7 bits, see alignment 1.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3302)

Predicted SEED Role

"serine protease, subtilase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EC42 at UniProt or InterPro

Protein Sequence (1287 amino acids)

>SO3302 serine protease, subtilase family (NCBI ptt file) (Shewanella oneidensis MR-1)
MFNKSFIAIAIGLTGISQASQENLKAYSWQNKVNYVINADADVRADHSGRSRYIIQLMQA
PAATHAAQLFNKAPQDRTSVSKASITQKLPQKISHLLQTSQLEQYRQEIAHHQGIFKTTA
SKTLGRPLQAKMQFDTAFNGMVLELTPDEAKTMLTVPQVLKVIKETPTELQTDNGPQLIG
ASNLWDGNATGLAAKGDGIIIGILDTGINTDNRAFSAVGDDGHNIINPLGSGNYLGDCVK
DATLCNDKLIGVYSFPLVTDEYNGLRPANGEDYNGHGSHTASTAAGNALVNVPVLMPNIG
EEVGDGIETGTVLSNISGVAPHANIISYQVCDQSGCYPSLTIASVELAIKAGVDVLNYSI
GPRGGVQNDPWNTASDIAFLSAREAGIFVAMAAGNAGPDAETVGNVAPWAISVAASSHQR
VWSHVLSGSGVTGDPLPQIEGLADVFTSNGVINALSDETEIVYAGDYKDINGNSLALCNS
RVYFFDPVMADLRGKVVICDRGEISLADKVTNMFFAAGVIIRNTPTSNQNMASARYALPS
LLINELDGKQLLEWMKRTDTPKVSISAANAEYDQANADILADFSSRGPYKWQTELMVPHI
AAPGVDIYAAYADEMPFTSVNDAAPSDFAFLSGTSMASPHVAGSAALLRQLHPDWTPAEI
QSAMMLTATTNVLKEDGKTPAGIFDIGSGRLQIDKAAQAGLVMDVPIDEYKAANPELGGD
VTSLNLPVLTSTQCMNSCSWTRTLRATRDGSWTVSSNGNVDGVTISASPSSFDIKEGESV
TVTFTANIALRANEDWSFMQVNLAPSDNSPMLSLPVAVKPLIALVPAFITQDYFWNKGDL
ELADFHFRYPENLLFNIKPLEKATSYHLTLAADSDNRSPFDNVNDGTALSFINVPDGSSN
LRVIVGESSAIDIDVFIGLDSNNNGIPEIVELTQACATSMNVGEACRLNAGSGRYWVLAH
NYKGSGDPLDAVRLDVLLQPNTETLPALVTIPNMSTKPYDALSAHLSWSGDMIEGVYYSE
LEVFDRNTPTAARAIARSNLVVNRVKPSVKIDLVKGDLSHRKEAELNIQLPTNPTSDSLT
YTLNLAMADNLTITDVETNGDISLNHDKNNIKVTLAPGETSTLIVAKINQKSPISGDFKV
DWSLNTDKSDFDVQQGSLMVSNTNKAPSLAVPKEIKGNMGSDVKFNIVSEDANQDPLSYT
VTQISGPAVDIKDDGKGEVILSLPEVNSSQVAKFNVNVTDGEFSQSSDMSLEITYINTEN
SGGAIFWSIVLLGLFGLRRKRLRTRSY