Protein Info for SO3177 in Shewanella oneidensis MR-1

Annotation: formyl transferase domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 49 to 67 (19 residues), see Phobius details PF00551: Formyl_trans_N" amino acids 83 to 198 (116 residues), 68.8 bits, see alignment E=2.7e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3177)

Predicted SEED Role

"Formyl transferase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECG5 at UniProt or InterPro

Protein Sequence (253 amino acids)

>SO3177 formyl transferase domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MIKVLLLCGNSQSSRIVYNSLKDVFLFELVIIEKKPSSKLMIKRRIKKLGFLRTFGQVCF
IFFNKLLSNIDKGKIVKLLDKYQLSDEYFPNANIKNVSSINEPDVVALIKSVAPDVIIVN
GTRIISNKLINSVGVPMINTHMGITPKYRGVHGGYWALANDDTQNCGVTVHLVDEGVDTG
GVLYQDTIKPSSEDTFNTYPLHQIAAAIPLIKKAIVDIYNRDVKTQPGIEPSILWYHPTL
YQYFYNRMIKGVK