Protein Info for SO3103 in Shewanella oneidensis MR-1

Annotation: AcrB/AcrD/AcrF family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 416 to 438 (23 residues), see Phobius details amino acids 461 to 483 (23 residues), see Phobius details amino acids 493 to 515 (23 residues), see Phobius details amino acids 567 to 590 (24 residues), see Phobius details amino acids 925 to 942 (18 residues), see Phobius details amino acids 948 to 969 (22 residues), see Phobius details amino acids 971 to 971 (1 residues), see Phobius details amino acids 977 to 1000 (24 residues), see Phobius details amino acids 1022 to 1041 (20 residues), see Phobius details amino acids 1048 to 1073 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 22 to 1073 (1052 residues), 478.6 bits, see alignment E=3.8e-147

Best Hits

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECN3 at UniProt or InterPro

Protein Sequence (1087 amino acids)

>SO3103 AcrB/AcrD/AcrF family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKHATESPMTLGISGRIAAAFQNSAITPLLALLGLLLGLFAILVTPKEEEPQIDVTFADV
FIPFPGATPTEVENLVTLPAEQVISEIKGIDTLYSFSQPDGAMIIVIFEVGVSRNDAIVS
LYNQIYSNMDKLPQGAGVGEPLIKPRGIDDVPIVSLTLWSKDRGSKDQQVSAEQLTHVAL
GLETEIKRIPGTREIYTVGQHEMVANVRIDPAKMNSFNLTYDKLRQSLNDNNHISMPASL
VQGNQEIKVQAGQFLQSIDDVKQLVVSISQDKQGKPIPVYLADIADISLKSDIPSQSVWH
SDKTDIYPAVTIAIGKQPGQNAVDIADAVLARIAKVDNVLIPNNVEVTVSRNYGETAADK
SNTLILKLIFATTAVVVLVFLTMGARESLVVGVAIIITLAITLFASWAWGFTLNRVSLFA
LIFSIGILVDDAIVVVENIHRHMALGRKSFSELIPVAVDEVGGPTILATFTVIAALLPMA
FVSGLMGPYMSPIPINASMGMLISLVVAFVVTPWLSRKLLKHHDASSTDKSHHQEAGANE
TENKMIRLFTRLIGPFLQDKGGRKARIGLAAGIFVLIGIAVALPVAQLVVLKMLPFDNKS
EFQVMVDMPEGTPVEQTQRVLQELSRYLATVPEVEHLQLYAGTNAPMNFNGLVRHYFLRN
SQELGDIQVNLVDKKHRKRDSHSIAISVREELQQIGAPYQANIKVVEVPPGPPVWSPIVA
EVYGPSPAIREQAAYEMQSLFRETKDVVDIDIFLPAAQQKWQVMIDRSKASLMAVPYSNI
VDLIATSVGGKDVSYLHIAQQKQPAPIRLQLQEGAKIDLEQVLNMKLQSQTGQSVPVSEL
VTIKRGNIDAPIIHKNMVPMIMVVADMAGPLDSPLYGMFDMASKIDGEGGLGFDQHYIHQ
PTGLDSVAVLWDGEWKITYETFRDMGIAYGVGMIAIYLLVVAQFRSYLVPLIIMAPIPLT
VIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQETAAGVPFERAVIHSGA
VRAKPIMLTALAAMIGALFILDDPIFNGLAISLIFGIFISTLLTLIVIPVFYYSAMKNRI
NLTQTID