Protein Info for SO3069 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1110 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 298 to 319 (22 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 62 to 134 (73 residues), 90.2 bits, see alignment 5.6e-30 TIGR03504: FimV C-terminal domain" amino acids 1066 to 1108 (43 residues), 58.4 bits, see alignment (E = 5.5e-20)

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 100% identity to son:SO_3069)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECR4 at UniProt or InterPro

Protein Sequence (1110 amino acids)

>SO3069 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKFRTSYLLGLMATILAVSSTTSFIDPAIAADTPKIKPLKIMGPDGQIRQVNHQYGPTTS
KDTFWSIAQKVRPDASVSVYQVMAAVFDANPHAFNSDSYNSLERGMILLIPSKEVMLSIP
NSVAIARAERSDKQVRNTAKVATKPVTKPVTKPVVVTPVVENKPKVEVKPEATKTEVAKT
EVVATPPATPVAPNMASSDVNTRLEAAESKNLSLTDELARAQDQLAVRNADVEALKAKIE
DLNQQIAVLEETLQASKKQNLALKAEVEAAQAPSETDAQPQIPAEPEDVWRNLMNNPLLL
VAAAVIPALLLLLLVFWMLRRKRNKERRELAAQQVAMTAGAAGMATGASVLAMDDDDIND
MAVHLDGDHADSIDSLLDVGSVSLQPEQEMTDGHEQMDIASEMFIDSGASTEAAPQFAED
EGQSLDDLWAEAMGDQEETFAEEKTKSGNILEEEDLDALLAGLGSDVSNEPSTNAASDTE
NFDELADFDIPSEPAAAIDSTDADLAAAIAAELESELENKPSAETADDDIDALLAGFNTS
EATDSVTDSEADDLDALLADFDKTPAEATPDLSDEIAAELDDDLAELGVEQTDDIDALLA
DFDKPVAPEPDLSDEIAAELDVDLTDIGVSESDDIDSLLASLDAPIQHDPVVAAAIAAEL
EEELNTELPVSDDDLDQLLAGFNAQDTAEVQTPSDINNGHSDEIAAELEATLPEELTAAD
DDLDSLLAEFDVPEQAEADADEFNFDLETTHLDTEDKAEEEEDLLKGIGAAHAIDGTDDT
FELSDTIADRRDDANEATDEPTFTGFVDNEANNVELATATLTAATAAAAAAKVKEKEASF
FNDLKANKSKDPHVLDWDTELNFAPTSSAKTEIPKPEPVAPVEPAPVDPQAVSARQPLEF
VLDEPIKKVEPTFTVNTDKDDDIVDVDLGHEFDLKADLDTDDIDLTDDSVLAAFSANVDI
EDEEVLTPEDSFALDDEHTLTVDEALAALDAQESRKSKKFVPEHDLTHFQNEHGYIDIEK
LLNDAEQDSVETDLYPEMDVEMSDVGALIGDAAMIDVDDEENSVNAKLDLARAYIEIDDS
DSAKALLREVQIDGNDRQQEEAARLLKEMS