Protein Info for SO3058 in Shewanella oneidensis MR-1

Annotation: flavocytochrome c flavin subunit, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF01494: FAD_binding_3" amino acids 48 to 206 (159 residues), 25.7 bits, see alignment E=3.1e-09 PF07992: Pyr_redox_2" amino acids 49 to 248 (200 residues), 29.5 bits, see alignment E=2.4e-10 PF12831: FAD_oxidored" amino acids 49 to 117 (69 residues), 41.3 bits, see alignment E=5.9e-14 TIGR01813: flavocytochrome c" amino acids 49 to 503 (455 residues), 489.4 bits, see alignment E=4.7e-151 PF01266: DAO" amino acids 49 to 248 (200 residues), 44.9 bits, see alignment E=5.5e-15 PF00890: FAD_binding_2" amino acids 49 to 491 (443 residues), 262.4 bits, see alignment E=4.1e-81 PF13450: NAD_binding_8" amino acids 52 to 87 (36 residues), 31.8 bits, see alignment 6.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3058)

Predicted SEED Role

"Flavocytochrome c flavin subunit" in subsystem Flavocytochrome C

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECS4 at UniProt or InterPro

Protein Sequence (517 amino acids)

>SO3058 flavocytochrome c flavin subunit, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MSKTQDINAGRRQLLKGGMVMAAGLGASMALPATASCDSAPVSFDEIVDVLVVGSGFAGM
SAALQARESGVKVMVIDKMPVFGGNSTINGGAMAVAGSPLQKQAGIEDSVDAMVADMLRA
GRGMNDVEMLKLVCNGTAESCQWLIDYGVHWKPFVQHFGGHSVQRVLQTVESSGAGIIRP
LIKAARDKGVIMKNQTKLEGFVKDDAGRVIGVEVREGFYFPNERTGKIRRIGARHGVIMA
TGGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPD
EKGFGTASQFNTIATYPHGIVVDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGF
TNAAGASKAQTLDWGLKYKVISKAETLDELAKIYGMPAKALKAQVERWNEAVKTGVDKEF
ERPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGG
IHGASRLGACAVAEGVVTGRNAGRNCAAASAVALKQA