Protein Info for SO3033 in Shewanella oneidensis MR-1

Annotation: ferric alcaligin siderophore receptor (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 PF07715: Plug" amino acids 52 to 150 (99 residues), 70.5 bits, see alignment E=1.7e-23 TIGR01783: TonB-dependent siderophore receptor" amino acids 52 to 700 (649 residues), 349.3 bits, see alignment E=2.6e-108 PF00593: TonB_dep_Rec_b-barrel" amino acids 225 to 668 (444 residues), 162.6 bits, see alignment E=3.1e-51

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to son:SO_3033)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECU0 at UniProt or InterPro

Protein Sequence (700 amino acids)

>SO3033 ferric alcaligin siderophore receptor (NCBI ptt file) (Shewanella oneidensis MR-1)
MPYAYADTSDNQKKSTKDIEIINVVGAKDLHDKRYKTPAMNTATGLDLSYLETPQSVTSV
TRQMMQDQQLNSVIEAMTSVAGINARPMDNDRYSISSRGIAVTSILYDGVPTTYDTRFNY
GDNLIDTAIYERVEIVRGATGLMTGAGNPSAAINLVRKRPTQEFMGSTSVSVGSWNNLRG
MVDLSSGLTDSGNIRGRVVAAYQDKESFQDRYQQQRTTLYGIVETDISDSTLLTLGADYQ
DTTPEATMSGGLPLFHSDGSRTNYDRATSTAPDWASAHTQGLNSFASLEHRFDNGWELKG
TYSYGDNSLEYNVLWATGYPDPVTNLGATAGSIAYIDGSRTQHNLDLRAQGMFALFGQEH
QLTFGWTGQRQEFANPYYYPTAAVPPLGDFRDPNFQYPKPQWKETHTTGSFGETEQSAAY
VATQLNLTDALALLAGLRLNQWQTDQNNFGSLYDFNVDNELTTYLGLTYALTEQYSLYAS
YTDIFAPQTLQRIDASYIDPVKGKNYEAGIKASLMDESLDMSLSVFEIRQDNVGERTGDV
LPGTTIPVYREVNGTQTQGFEFESTGKITDDWNIYFGYTQFSTDDPKGNRINTTSPRQQL
KLFTTYTFSGDWNKLQLGAGVNWQSRVYQTVNSPLGRVEVEQDSYALASLMTSYAFTEQL
KLSANVHNALDKTYYSQVGQYSQFQYGTPRSVSVNLDYRF