Protein Info for SO3030 in Shewanella oneidensis MR-1

Name: alcA
Annotation: siderophore biosynthesis protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details PF13434: Lys_Orn_oxgnase" amino acids 12 to 346 (335 residues), 406.8 bits, see alignment E=3.7e-126

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3030)

MetaCyc: 100% identical to putrescine N-hydroxylase (Shewanella oneidensis MR-1)
1.14.13.M63 [EC: 1.14.13.M63]

Predicted SEED Role

"Siderophore biosynthesis protein, monooxygenase"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.13.M63

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECU3 at UniProt or InterPro

Protein Sequence (498 amino acids)

>SO3030 siderophore biosynthesis protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MTTPKKEIDRTIYDLLGIGIGPFNLGLAALCEPINDLSCLFLDAKTEFDWHPGMLINSSR
LQTPFMSDLVTMADPTSRFSYLNFAKQTSRLYSFYIRENFFLPRHEYNQYCQWVSKQLSN
LNFGVKVTQVNYNAGEGIYAVTAIDRRSGKPLTYLCRKLVLGTGTTPYLPDNCPIQDPRV
MHSASYMQQKTYLQSQSAITVIGSGQSAAEIFYDLLQDIDIYGYQLNWMTRSPRFYPLEY
TKLTLEMTSPDYVDYFHELSSEKRHRLITEQKSLYKGINAELINDIYDLLYQKRLISNIQ
CQLLTNVALTAIDTSGDKLKLQFKHLEQDYALDQLTSAVVLGTGYQYHLPDFIQGIKSQI
EFDDHGQLAIQRDYGIDVRGDIFIQNAGLHTHGISSPDLGMGCYRNATILQAVLGYAPYP
IETRIAFQTFAPCNIADAKRQPLESNTHSAVTPSKTRQGLNPSAKSVQQPSIEPQTALRI
APTGGNVSALMAPNKEAQ