Protein Info for SO3013 in Shewanella oneidensis MR-1

Annotation: site-specific recombinase, phage integrase family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 237 to 254 (18 residues), see Phobius details PF13356: Arm-DNA-bind_3" amino acids 3 to 89 (87 residues), 63.8 bits, see alignment E=1.3e-21 PF00589: Phage_integrase" amino acids 212 to 385 (174 residues), 43.2 bits, see alignment E=3.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3013)

Predicted SEED Role

"phage integrase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECV9 at UniProt or InterPro

Protein Sequence (419 amino acids)

>SO3013 site-specific recombinase, phage integrase family (NCBI ptt file) (Shewanella oneidensis MR-1)
MALSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPL
LSLKEAREQCEAYRKLLLDNQDPREYKRDKAAKAVSNEGSVEQVFRAWHKSQFSDGRASV
KDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVSRRALK
WAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRIMVF
MALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLLELAF
SLSPNELVFPTEKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHDLRRTQRTNMSKIT
TTEVAETMLGHKLSGIQSIYDHYDYLEEQAKAYRIWWQKLQRLKDPAAYHNVVELKAAQ