Protein Info for SO2967 in Shewanella oneidensis MR-1

Annotation: hypothetical phage terminase large subunit (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 PF03354: TerL_ATPase" amino acids 91 to 267 (177 residues), 105 bits, see alignment E=4e-34 PF20441: TerL_nuclease" amino acids 275 to 563 (289 residues), 122.7 bits, see alignment E=1.7e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2967)

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (581 amino acids)

>SO2967 hypothetical phage terminase large subunit (NCBI ptt file) (Shewanella oneidensis MR-1)
MATRKKTTSTSSSADIEDRVTRWAKQVASGEFLAGPDIRNACKRHLKDLETGHERGLTWD
LAAANRAISFFPKVLRLSGGDHEGKPFNLLDWQAFIVGSLFGWKDADGTRRFRMCYVESG
KGSGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAMVLFRDAVSMVNQSPQLSSRLKK
SGTGQSVWNLAYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGR
KQALIFMITNSGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQ
KANPSLGHTFTHKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDF
DISELYGEECYGGLDLSGTRDLTALALYFPRVKTLLVDLWTPKDTLLDRERTDNVPYSAW
LRQGFIHAPPGHAVDYSFVAERIAELSALFEIKSIGFDQYRIHYLEPELAEANVFIPLVK
HGQGYYKASESNLWMPRSIELFEKLITSKEIRIKTNPCLRWNAASAVLEADAKDNRIFTK
KKSTGRIDGVVAAAMAVGTALESDGVDDTEDWLAAIKDPIY