Protein Info for SO2953 in Shewanella oneidensis MR-1

Name: H
Annotation: prophage LambdaSo, tail length tape meausure protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 914 transmembrane" amino acids 167 to 189 (23 residues), see Phobius details PF06791: TMP_2" amino acids 104 to 305 (202 residues), 281.3 bits, see alignment E=5.2e-88 TIGR01541: phage tail tape measure protein, lambda family" amino acids 542 to 862 (321 residues), 172.4 bits, see alignment E=6.8e-55 PF09718: Tape_meas_lam_C" amino acids 693 to 766 (74 residues), 97.1 bits, see alignment E=5.1e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2953)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED18 at UniProt or InterPro

Protein Sequence (914 amino acids)

>SO2953 prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MANKSLGTLTLNMVAETGSFVEGQTKAERALAKTEAAAAKQKAELNRLLGQIDPLVAEYS
KLDKMEQQLRRHRESGSLQQAEYDTYSKKIAQMRTEVGKAGVEYDKTGMSAKQMAFATRG
LPAQFTDIAVSLQAGQNPMTVFLQQGGQLKDMFGGVGPAAKAMGGYIMGLINPFTVAASA
AGVMALAYYQGSIEADRLRNALILTGNSAGTTTDQLMEAAKRIDAISGTQRQASAALAEV
ANTGKFTASQIELVGLAAVKMENTTGKAVADTVAEFVKLADDPVKAAEELNKKFNFLSAS
TYEQIVALKEAGKSTAAAELAFSAYSNAIDQRTKEITGNLGSIEKAWKAIKSGAVESWDQ
ILNIGRADTLEQQYAALSKRIEDLRPKTKQGEWGYGLAREELKALEAERDSVMALMKTER
DRSAEQAKRAKLNQDSIEAQRAIAKVTEETLTNEQKRNKAIKEYNDNIEKVRKADPNSAL
LNADKIKRDLASIEEKFKDSAKTTKAFADDAATSYLMRLRETQAGLQGQLDRNTKLTQSQ
KELLQFEQQIADIKNKDVLTAQQKSLLAEQSVIRAQLEKNVALDEELKKRNEALRLQSYS
ANLAANLAAEQQRNADKLASFGLGDKAQQRLGDRQSIERDIERAQGKALSDNLAGRTTDE
EYQAQLVMLKQNLSDRLAAQNEYYIALDAKQADWTNGARSSMQNYIDAAADMAGQTEKLF
DSAFGGMTDALTDFVTTGKADFAWLTKSILADIAKIAMQKAIAGIASSIFGGFSEGGAVG
YSSGGYTGAGGKYEPAGIVHRGEVVWSQRDVARAGGVATVEAMRKGHKGYDNGGIVGGAA
YNGVPASATAGAGVVHVEVNIDQSGNATTTADTPALSQFGSELGKFVEQKYRQLLANDLK
PNGQIGRTMAGGYR