Protein Info for SO2940 in Shewanella oneidensis MR-1

Annotation: prophage LambdaSo, host specificity protein J, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1341 PF13550: Phage-tail_3" amino acids 344 to 506 (163 residues), 64.4 bits, see alignment E=1.2e-21 PF09327: DUF1983" amino acids 1184 to 1266 (83 residues), 111 bits, see alignment 2.4e-36

Best Hits

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED31 at UniProt or InterPro

Protein Sequence (1341 amino acids)

>SO2940 prophage LambdaSo, host specificity protein J, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MGIPALNQKLVIHGAKAGESEQRTPVESPDDLRSIAKAKILLAIGEGEFEGQLSGKNVFL
DGTPLLDANGAENFPGVIWDFRHGSVHQTYIPGVPAVENEVALGIELKSEQPYTRAITNS
LLSAVRVRFRWPALQQQLDNGDVNGYRIEYAIDLSTNGGSYQTVLSTAVDGKTTQPYERS
HRIDLPAGNSWQIRIRRLTPNQNNNRVADLMQIAAITDVIDRKLKYPNTALLYVEFDASQ
FQNIPVVSCEPFMRKVKVPTNYNPLTRQYTGVWDGSFKIAWTDNPAWVSYDIILDDRFGT
GKRINASLVDKWELYRIAQYCDQLVPNGKGGMEPRYICNIYIQQATEAWQVLRDLASIYR
GMTYWSNGQIYSVADMPRDMDFIYTNANVIDGKFSYSSSSEKVKYTRALISWDNPDNAYE
SDVTSVSDQALQRRYGDNVVELSALGCTRESEAQRRGKWALYTNNNDRAVNFKVGMDGSI
PLPGFVIGIADQLIAGSRIGGRISAVNGKQITLDRATTIAVNDRLIINLPSGKAQARTIE
AVNGRVVTVTTEYSETPLPQLLWSVESDELKLQQFRVLRVAKANSDSIEYEITAVEHNPS
KYPYIDTGARLEDRPISKLPVGAQQAPATVTISQSTFTEQTLSVTTMTIQWATAKNAVAY
EVEWRKDSGEWVKLPKTSGTSVDIRGVYTGQYIARVRAINSVDVSSVPKSSDLTNITGKT
GLPPAVASFTTTPLVFGIALNWLFPAGAEDTLRTEIEYGPNNNDNGMIKLGDFAYPINSH
TMTGLSAGVSFWFRARLVDRTGNVGPWSNFVNGQSSTDQTKYDEYFSERITSSALGQELL
DEIELIPVIKAETDKIPDIENDIAVAQSKIDQMQADIADIAGAPEWDSNIAYFSGQLVKY
QGKLYSAKQDVPAGTLPTNATYWEKIGEYSTIGEALAALTVRVDTVETSIEEIDGKLTAE
SSRIDGIFAQVNPPLAGDTGWNAGSTVVFAGVWSEQYARAAADEALAKSIETVAATIDKN
AAAIITEQMARATADESLAKQIISISATVNGNAALIKQEQTARADADSALGQRIDTVQAT
TGANTAAIQQEQTARANADSALGQRIDTVQATTGANTAAIQQEQTARANADSALGQRIDT
VQATTGANTAAIQQEQTARANADSALGQRIDTVQATAGANTAAVQQTSTALAELDGKLQA
MYSIKVGVTADGKYYGAGMAIGVENTPEGMQSQVLFTADRFAIVNKITGTSTITTPFAVQ
GGQVFINSAVIGDGTITNAKIGDYIESTNYIAQNTGWKLDKSGVFEINGNTAGEGRMQIS
NNQIDVYDNSGNLVCRMGKLT