Protein Info for SO2934 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03502: extracellular lipase, Pla-1/cef family" amino acids 1 to 805 (805 residues), 1030.1 bits, see alignment E=0 PF12262: Lipase_bact_N" amino acids 45 to 272 (228 residues), 106.5 bits, see alignment E=7.5e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2934)

Predicted SEED Role

"Lipase-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED36 at UniProt or InterPro

Protein Sequence (827 amino acids)

>SO2934 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPATSKVPLPNDLLFSGT
KDGTLSIPGESSGNYTDPQIALGALDGWSTTSPISIDIDLAKNHDGTQLSLLAASVAQPG
AVRMFEATVGGALSSDPECKAKPSVSACKVGAELKFGVDFVSTASGSKVVILPLKPLKAG
QSYIYATTNLIQDSEGRGIASSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGIAAAH
NVDTSTISYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGVTVAQAAGLTPTD
GAAYVVSSLADVYTAKIKLPIYGECSSVSCLSAEGKPLINGRWKAQGDSPVSVLLALQAG
TLSQTNFGMQAVANGITNPADALANPSLMAGKTWLLDDGTAVDKTKHLTKFNPIPAVKGY
ETVSVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG
VATVAIDMPLHGARSFDANGDGIYEVSATDPSFGEVIGTPDAFKNGNPLVFVNISSTLSV
RDNFRQATMDHLGVRLALSGLAQGLAQASKPQIFDVTKISAQGLSLGGIVGTDFATYAST
GMKNPSTGEALPNPYAINAASLVAPAGGLAGSFAGSATFGPVLFNNVTASATFKALVDKA
NTAGYEPGSPEYAALVQAVYAQFIPTFAFAVQTAVDSADPINHAAMLKATKLPVHLIEVA
GDGNGNLPDQVLPNRVDNFPLSGTEPLISAMGLPCVDATTKGTGAVRFAKGHHSSIVDPS
EKSSTDGMAGAATVEMQTQVATYASTAGKGEATIFVTDPSVIATCPN