Protein Info for SO2900 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF06452: CBM9_1" amino acids 40 to 206 (167 residues), 31.8 bits, see alignment E=1.4e-11 PF19313: DUF5916" amino acids 240 to 335 (96 residues), 51.1 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2900)

Predicted SEED Role

"FIG01056734: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED67 at UniProt or InterPro

Protein Sequence (793 amino acids)

>SO2900 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKTFLPLLLSSVVFISAPCMAGFASQFQLTIPTLDGAANIDGEFDEAVWQYAALTELRYE
TQPGENTAAPVYTEAKIYATQTSLFIAFIAKDSQPKQIRATLKDRDNLWGDDLVGIKLDT
FNNARLAYQFFINPLGVQLDSMENELTGEESEAWDGIWKTAAKITDQGYQVEVELPLRLF
NFDDKQSIQTWGFELIRYYPRNENHRISTHKIDRNVSCQLCQLGVASGLASAKQGQDLQI
TPAFVANRNEHNTENGWQAETDYEPGLDLRWGINARTLLNATINPDFSQVESDEGQLDIN
TTFALFYDEKRPFFLDNKDYFDTQVDLLHTRNIVSPNYGLKLTSQTEQHTLALLATNDSQ
TTFLMPGNLSSEVASLNQESLNLAARYRFDMDKTFSLGTLLTVKASADNQLTEVAAQNDD
HNYVMSLDAKYQPTEQDILTAQVALSQTLYPTAMYRQFCGDVQGEITENRPCGQTPLLCE
LGQCQVNEQVLRSQSDEHFSGSLYQLTYEHNTRDWFAYSEYHDVSPDFRADLGFVEKIDY
HSFMAGGGLIWYPEVWFNKIKFGGDWDITHNQAGEQLEQEFEIFWEMYGAQQSELSFGVE
TRERVGPRHDAAQLAVIGNSNQYEETQGWLYGAITPISALSLELEIHYGDEIDFLNDRLG
TNTLINPILNWKIANGLSMEISHQFQHMDVEQDTLFTANLTDMRLHWQLSLHSFIRLSSI
YTQIERNLAQYLYSTPDSEEAHLGNEILYGYKLNPQSVFYLGYSDSLSSDDELTRLTRDE
KTYFMKLSYAWLL