Protein Info for SO2877 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 TIGR03420: DnaA regulatory inactivator Hda" amino acids 8 to 235 (228 residues), 289.5 bits, see alignment E=8.4e-91 PF00308: Bac_DnaA" amino acids 20 to 215 (196 residues), 65.7 bits, see alignment E=2.9e-22

Best Hits

Swiss-Prot: 52% identical to HDA_YERPB: DnaA regulatory inactivator Hda (hda) from Yersinia pseudotuberculosis serotype IB (strain PB1/+)

KEGG orthology group: K10763, DnaA-homolog protein (inferred from 99% identity to shm:Shewmr7_1651)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED87 at UniProt or InterPro

Protein Sequence (236 amino acids)

>SO2877 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MPLNSPLQLSLPVYLPDDETFNSYYPAAGNDELIQKLRANAEGHGEAAIYVWGPVKSGRT
HLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPVWEEAI
FDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRR
AAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLHL