Protein Info for SO2856 in Shewanella oneidensis MR-1

Annotation: CBS domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 620 PF00027: cNMP_binding" amino acids 49 to 118 (70 residues), 38.1 bits, see alignment E=2.5e-13 PF00571: CBS" amino acids 153 to 205 (53 residues), 47.5 bits, see alignment 3.7e-16 amino acids 218 to 272 (55 residues), 44.3 bits, see alignment 3.6e-15 PF03445: DUF294" amino acids 300 to 436 (137 residues), 161 bits, see alignment E=3.3e-51 PF10335: DUF294_C" amino acids 473 to 616 (144 residues), 147.5 bits, see alignment E=5.1e-47

Best Hits

KEGG orthology group: K07182, CBS domain-containing protein (inferred from 100% identity to son:SO_2856)

Predicted SEED Role

"Predicted signal-transduction protein containing cAMP-binding and CBS domains" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDA6 at UniProt or InterPro

Protein Sequence (620 amino acids)

>SO2856 CBS domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MNASELQPVVQFLTSTAPFDTFSEEFIRRCAKAVIIGYYSKASGFVQFDAEAPKLYLVRS
GAFEVRDPEGVLLDRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHFPQALFDQLRSES
RHFDKFFTRAFAKRLRHEARFKAKDLATTSRISTLMSSSPITIDAHATVTQAALLMRNSR
VSSLLVTDNHKLVGILTDKDLRNRVLASGLDGQIAVHQAMTTSPISISSNALIFEAMLLM
SEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLISVSKQ
IPVLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAFCWLTFGSQGRQD
QAACSDQDNGLLVAEEMDDFAKGYFDALTHAVCAGLDQCGYMFCPGNIMAQNPKWRMSLN
QWQKVFEKWVITPEPKALMHASIFFDMRSVYGPQSLFDALQDKVLAQTKDNDIFLAGMAG
NSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIREVNTAKRIR
ALMDANILNRKDALNLADAHEFIAHMRLSNQGYQHTQGLKISNYLLPGHLSSLVRHQLRD
AFKVVHDAQSGMKMKFMRSF