Protein Info for SO2846 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 190 to 212 (23 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details PF01925: TauE" amino acids 13 to 248 (236 residues), 174.6 bits, see alignment E=1.4e-55

Best Hits

Swiss-Prot: 54% identical to Y198_HAEIN: Probable membrane transporter protein HI_0198 (HI_0198) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07090, (no description) (inferred from 100% identity to son:SO_2846)

Predicted SEED Role

"Putative membrane protein YfcA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDB6 at UniProt or InterPro

Protein Sequence (256 amino acids)

>SO2846 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MEFELTLQVAALLFGVAMVAGFIDSIAGGGGLLTIPALMWAGLPPAVALGTNKLQACGGS
FFASLYFVRKGLVDLKTVKLALFCAFIGAALGTVLVQLVDTKILELVLPFLILAIGCYFL
FSKKVSEEDRHQVLTPTVFAFTAALGVGLYDGFFGPGTGSFFALAFVTLAGFGLAKATAH
AKVLNFSTNIASLIFFALGGKVIWLLGLVMLAGQAIGATLGSRLVVTKGTKIIKPLVVTM
SLAMSLKLLASQYQLF