Protein Info for SO2798 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 20 to 36 (17 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 79 to 108 (30 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 188 to 213 (26 residues), see Phobius details PF01891: CbiM" amino acids 60 to 217 (158 residues), 24.9 bits, see alignment E=8.4e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2798)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDF4 at UniProt or InterPro

Protein Sequence (230 amino acids)

>SO2798 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MMLDFLAKRLAEIDWNISPLQGLSLLLLGLWIYAIWPKEELLQVVKNKGLQWRLLLTLIA
VNTLWLLNASIQAGIHLHFLGIVTCLLMFGWRLATVALLLPSAFFSVFVLKVPAEFGAFG
LFAIALPLFCAFMLYSRSYHVFPKHLFVFIFVGAFINAGLSTVFHQFSWAFWLWLSTDYD
WSMLVDNYLMLIPLLAFPEALLNGMAVTLLVVYQPQWLFDYSDREYLWRK