Protein Info for SO2697 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 PF20155: TMP_3" amino acids 74 to 266 (193 residues), 121.6 bits, see alignment E=1.8e-39 TIGR02675: tape measure domain" amino acids 142 to 225 (84 residues), 51.9 bits, see alignment E=3.8e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2697)

Predicted SEED Role

"Mu-like prophage FluMu protein gp42"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDP6 at UniProt or InterPro

Protein Sequence (553 amino acids)

>SO2697 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSKKLVTDIVLNLSGNLSEKAIRYGDQIKNLGEKSKVGFGMISSSAAAASRGIDTFGNRA
ILGVSAGAIAFERTFIKTAAEFERYQIMLNKLQGSEANGLKAMEWIEKFTQETPYGVNEV
MNSFIRLKAFGLDPMDGSLQAIADQAAMMGGTAETVDGIALALGQAWTKGKLQGEEALQL
LERGVPVWDYLIKASKDLGKNNGVGYTAAQLQDMASKGLLTRDAIKSLIKEMGSASQGSS
KKQMESWNGMISNMGDAWTIFKKDVMSSGAFTVLKTELGGVLKQLDEMKKTGEYDKLVEK
VGKDLVEGFKTAAEAARGLRDVGRDLLPILKAIGSGASAIADAVGGYENLAKILLSVYML
NKALRIGAPLLKGAIGAGGFVFDKATGGLGGKGKGGISDLGVMPVYVVNMGAGGMGGGLP
DGVDPTGTKKGASKASRIFNLQNLAALGTVGYAANMTYQNPDDWLPFNLRRKSELDPTAL
HGIPAAPGLLDVLDDFKRWFAGSPSPDAANVVNAMNTVGSKLALDISVSDDRIKVKPKSI
PPGIVIDADTGTN