Protein Info for SO2677 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF11985: Phage_Mu_Gp27" amino acids 11 to 193 (183 residues), 187 bits, see alignment E=2e-59

Best Hits

Swiss-Prot: 48% identical to VG27_HAEIN: Mu-like prophage FluMu protein gp27 (HI_1499) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to son:SO_2677)

Predicted SEED Role

"Phage terminase, small subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDR6 at UniProt or InterPro

Protein Sequence (193 amino acids)

>SO2677 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MQVSSTRKSKVNLLPQEIRDQLHALLRSGTMHQKDILEAVNQMIDEAGLGEDAKLSRTGF
NRFAKKFEQVGERIRQSREVAEVWTAKLGQAPTSDVGKLLQEFVRTMAFETSMKMMDAAD
QEDAEPISPKALGQLALVVQRIEAAAMSSIKVEKEIRSAFAAEAATKVEQIVKQAGISAE
TAIDIKNQILGIA