Protein Info for SO2668 in Shewanella oneidensis MR-1

Annotation: prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF08765: Mor" amino acids 42 to 144 (103 residues), 121.3 bits, see alignment E=9.3e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2668)

Predicted SEED Role

"Middle operon regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDS5 at UniProt or InterPro

Protein Sequence (145 amino acids)

>SO2668 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MANSTPTSAKHNAANEENGDFFGYDNVTLEDVTRLVEDEDSSRWPVAMSQLYQLFKRDLA
RHDVDTKIAISLLNSICKEFGGVQFYLPRGCQLEIEIMNLSIWHEFKGDNVEELARKYNK
SMQHIWRVIAKMRSREIKNRQPELF