Protein Info for SO2545 in Shewanella oneidensis MR-1

Annotation: sensor histidine kinase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 PF02518: HATPase_c" amino acids 318 to 422 (105 residues), 86.8 bits, see alignment E=1.4e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2545)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EE45 at UniProt or InterPro

Protein Sequence (429 amino acids)

>SO2545 sensor histidine kinase (NCBI ptt file) (Shewanella oneidensis MR-1)
MSQSQLLQKLASRLPLGVCVVDEHYQIIYWNEFFTDRLPTAKSDTQENNLLTLFPEAAKF
LQKKINSVFVLNNASFSYWEHRPHVFDFSSSRPITGEETAMYQNIEFFPLDIEDHQVKTV
CLIVQDVTELASYYQAQKCLSEQLEQEHTALSLLNKKLEAAQNQLLQSEKMVAIGQLAAG
VAHEINNPIGFVNSNLQSLQDYNNKLLKLLNFYQKLTHKIGSVPYFTLEQDMLKRYQFEF
ICSDLPDLIRESIEGLDRVAVIVKSLKSFSHVDSSEWQYANVIEGIENTLKIAANQIKYK
AVVLRNFQDNLPELYCQPMQLNQVFLNLLVNAAQAIEERGEISIDVSASDAEFIIVIRDT
GSGIAASDLRKIFEPFYTTKLVGTGTGLGLSLSYSIVQKHKGEIKVSSVLGEGTAFTVIL
PILSPEDVA