Protein Info for SO2504 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 90 to 107 (18 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 142 to 158 (17 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details TIGR03902: rhombosortase" amino acids 37 to 189 (153 residues), 184.2 bits, see alignment E=7.4e-59 PF01694: Rhomboid" amino acids 49 to 192 (144 residues), 47.4 bits, see alignment E=1.2e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2504)

Predicted SEED Role

"Rhombosortase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EE84 at UniProt or InterPro

Protein Sequence (204 amino acids)

>SO2504 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKLLTLNKFGPYWLAFIVSVLCALLYVAGLFTPSIDTLLAYRRSDIGDGQWWRLVTGNLL
HTNHWHLLMNLAGLWVVLFLHHFHYQPRGLTVLFILLCLFEGIGLYLGYPQLLGYVGLSG
MLHGLFAYGAVQDIRRKMRSGYLLLLGVIIKVGHEQFYGASDDVTAMIGARVATEAHLVG
LICGLVCALLFFVFQRLILTKAKA