Protein Info for SO2459 in Shewanella oneidensis MR-1

Name: cga
Annotation: glucoamylase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 transmembrane" amino acids 27 to 45 (19 residues), see Phobius details PF09137: Glucodextran_N" amino acids 74 to 360 (287 residues), 277.9 bits, see alignment E=9.8e-87 PF00723: Glyco_hydro_15" amino acids 378 to 827 (450 residues), 155.3 bits, see alignment E=2.5e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2459)

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EEC3 at UniProt or InterPro

Protein Sequence (847 amino acids)

>SO2459 glucoamylase (NCBI ptt file) (Shewanella oneidensis MR-1)
MNMPFTEQPKQDCGQLKQHSSSLTLKPIALAITASLIGLASLSACSPIADKSASSTTSNA
VSNNEINTASYNIAPGAPGKAPTWAFSGKTGIGTSYEPYTQGQYQDSQQNPISRVWFSIA
QGILTETMFGLIHNAQLKELQFVITGNGFVDTEKDNTISSIEYLDTDANGRPQSLAYKII
NRDVEGKYQIEKHIFTDPGRDTLVMRVTFTAFEAGITPHLYVNPHIDNAGANDIGRIDHQ
ALIAYTAAPHSSVMTVKSDINFVRATTGFEGISDGLADLADNGTLDTLYSATSAPDNRTQ
GNIAFTASYPEVTPNQPLNINLAIGFGHDELSSLTNAKATLNAGYDAVLGQYNAGWRSYL
QSLPAIAGMAKSTTDNGKLLYTSAMVLKAQEDKTYAGALIASLSNPWGDTVSAITPSTGY
KAVWPRDFYQCAMAFLAMGDTQTPKVAFEYLKKVQVSDKTSGFSGTPGWFLQKTHVDGQI
EWVGVQLDQTAMPIMLGWKLWQAGGLSQTELSYWYQEMLKGAADFLVSGGEVNLDWNHTP
VTPPKTQQERWEEQAGFSPSTTAAVIAGLVTASDIAKAVNDLNASQRYLDSAKTLNQQLE
KHLVTTQGLLTDSQGVSTPYYLRLSPHGEPNTATKLAANNGKAGLDQRQILDAGFLELVR
YGVRGATDKLINQSLALVDNTKLEDNLRLKYSFTAKDGSSVPGFRRYGNDGYGEDTVTGA
NYAESGGNSDNQRGRVWPFFTGERGHFELALASAKGELTGTKGQQTKQQLINTYVQGMET
FANAGMMLPEQAWDGVGNATRYQYRLGQGTNSATPLAWTHAEYIKLVRSMNDGQLWDHYP
IVPETLK