Protein Info for SO2439 in Shewanella oneidensis MR-1

Annotation: srpA-related protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF12118: SprA-related" amino acids 158 to 539 (382 residues), 535.7 bits, see alignment E=2.5e-165

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2439)

Predicted SEED Role

"SrpA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EEE3 at UniProt or InterPro

Protein Sequence (716 amino acids)

>SO2439 srpA-related protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSVMALSSQVVAPSSSFVGADKSLQLNSGAKPQIGQTYQGGDGKAVTMFAAQTVGLNAPK
LEANGALEPSLNSLSAVINQTIPAGAVKPSIPLLNGGKLPRLSPISTDSGLAQTATMEFD
TSLSSSVQRYSNNASFNLLTGPRSIAGMREGQIAALPTTSTQGTAILSASDVSLTALAGV
NSTIADSIMFGSSIGTTIGSPTGLTNSFPASSMGDILPSFVTPSVAVGTSSTNNGSSSVM
SPFAADMTASGGTGINSTVKTVNDATGSISTSSSSSTTETISPDSGEQSNLKQQFNAIFG
QSETINGQTDTESTSAAQTKDQQVKDEQTQQEREKVAQEQKQKQQALAAIFAKETQQSPA
QQSQEETKTREQELAKEHIKQAQEKAIEQHKAQVEALKSRDSEVKAHEHAHATVGGQYAQ
SPSFKYEKGADGQRYATDGEVQIDVSIIPGDPIATINKMKQVYAAAMAPVDPSSADIRVA
AEALKKMNEARTKLAEERQQQIVDQQTTETLIGAEAQIEGLPPLKERQIQVTGEVDAQGN
IAAPQDEPSSPVTDVIDKIKQAITAQIASSKTSDAINGTEVDTTDTIEPPTATLAIDLPQ
AAEDNSAQSSTNTLALLAASTSYNQDLLQTGRSAMRFYGSVALANLTNNDGVNVSQSGIN
TQVAGAITYSEDKENQSNSVQSSRLTLESLHSLDTRGLFNAQTLALHRPRFLDVNV