Protein Info for SO2285 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 34 to 35 (2 residues), see Phobius details amino acids 53 to 80 (28 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 131 to 143 (13 residues), see Phobius details amino acids 150 to 178 (29 residues), see Phobius details amino acids 190 to 207 (18 residues), see Phobius details PF01810: LysE" amino acids 24 to 200 (177 residues), 53.1 bits, see alignment E=1.5e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2285)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>SO2285 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MDIQLINDPKLWTLMVSAAFFCATMTMTPGPNNILLASSGAHFGVMRTLPHIAGIRLGST
SLHLSVLLGLGALFEVFPYLHHILKYAALLYLLHLAYRLVTSPVNAAHLDEGRKPMSLME
AALFQWINPKSWMSTITLCSAFTLGGEGFWLSALLGVLVFNLVGFPASFTWVFVGAAISK
TLNTDKRRRHFNWFMGSLLLVSLPMILR