Protein Info for SO2149 in Shewanella oneidensis MR-1

Name: recC
Annotation: exodeoxyribonuclease V, gamma subunit (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1270 PF04257: Exonuc_V_gamma" amino acids 2 to 365 (364 residues), 364.3 bits, see alignment E=5.5e-113 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 3 to 1180 (1178 residues), 957.5 bits, see alignment E=4.9e-292 PF17946: RecC_C" amino acids 912 to 1169 (258 residues), 154.3 bits, see alignment E=3.9e-49

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EF44 at UniProt or InterPro

Protein Sequence (1270 amino acids)

>SO2149 exodeoxyribonuclease V, gamma subunit (NCBI ptt file) (Shewanella oneidensis MR-1)
MLKLIQSNQMEVLCAHLAAYLRQPLPGGCLLQSEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLEEESFGPLRHYLGHIE
SSSPDSTTKNNQLEASNSIAADNIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLDAL
KLNEEQRWQPILWRALIAFNRDELRQSHYHRANLHQDLIAALADSTHSLAKLPERLFVFG
ISSMAPQTIDVLHQLAARIDVIILNLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWE
DKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPDCNASMLAGVQ
YDILEMQTLDRVLGPDAELYQAVTNRRRLKRVDDSIQIKSCHSPLREVETLHDHLLDLLD
RDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLL
NINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRVKQGVPA
FEQNSWAFGIKRLILGYALRNDAPLYQASPQAPSYLVVSGVEGQSAQALGKLLNFIEVLD
ETTLQLAQPQAPCQRLFELTQLLNAFYAPDEDEREQLQEVRDAIATLEQELQAASPADSY
TAAYDVNPYFLDQSGLHSNALNLSIEVLAQWFNQRLTESRVGQRYLAGSVNFCTLMPMRS
IPFKVVCLLGMNDGIYPRMQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLY
ISYIGRSERDNSERIPSMLVSELIEYCQLCYVPESLTAETPAVGNEAAQQALLETIISHQ
PLQPFDPKLYQSTEPQAQAIKQSYSQQWCPPDISTQSIQRRFIDANTQIVLEDDTIGDSD
IQQNIEPLSEEEHVDISAFIRFFRHPAQYFFNRTLKVDLNLNIQADDNDEPFSLNALERY
LLQARLLDDALEQGALEQGALEQGQAQPSSELLQRLKASGNLPMQPFDDLLLRQYSHDIA
PLIGRTLFMRGDVAPRHADIRLAFELPLSHVAATTKVSVKRVLLEGRIDDISPKGLVSCR
PGSAHGRDILALYLRHLCLMAAGLTQPSDQQPSYLQPSYLLDMGHFHALSPIAPKQAHDR
LVHLLQHFYQGQLHPLCFMPKTSLAYASAEINEDETSQLDGQYDSQHSVRLEAAQSEWLD
EQGELGEGTDPHYQRLFRFPQDFTEANFGKLADEIYRPMLSLYHKDTLAQLEEFVLNAEP
QTATSEGAQQ