Protein Info for SO2043 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 155 to 172 (18 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details PF01794: Ferric_reduct" amino acids 54 to 166 (113 residues), 55.8 bits, see alignment E=2.5e-19

Best Hits

Swiss-Prot: 48% identical to MSRQ_CROS8: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: None (inferred from 100% identity to son:SO_2043)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFD8 at UniProt or InterPro

Protein Sequence (215 amino acids)

>SO2043 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MFNITALRVSPKQLLWVKLVFHLIGLIPITWLVFTVLSSRAGGDPVQHIIHFTGIGALNA
LLTTLLISPIAKRFKLGWLMQTRRLVGLYVFAYATLHIVAFFSLDLLFAWGLFLSEVAKR
PYILVGAVAYVIVSALAFTSFKILMRKMGRRWQTLHNGVYLVAILAPIHFYWSVKSEIVE
PSLYILGFSLLLAWRLPIWQKMRTSRLAMAAKDKQ