Protein Info for SO1949 in Shewanella oneidensis MR-1

Annotation: invasin domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1237 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1949)

Predicted SEED Role

"Invasin domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFM1 at UniProt or InterPro

Protein Sequence (1237 amino acids)

>SO1949 invasin domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKSAYKVFLAGLCSLFLVACGGGGSITDDGTGPTPTPSVITVSLSISNSDNVSLATPAEV
KATVVDSKTGPKAGVVVTFKLDNASLGIFTPATGTQLTDSSGVATIKLETATLAGAGNVT
ASIATGESATKGFFSKGDGVTNPGTGNKLALSLVNQQQQVITGISAAVRGIIKASYTNSL
NEPLVGKVVVFNSTLGKLSPESGTALTNSQGIAEISITAGTIAGAGKITAKVDGTEAEPL
GFNTLGDEVVVKPIDSYAITLNIQDSQGNNLRKISHSVPGSVVATLLKDGVPASYQKISF
NLNGEGILNPSSGTALTDLSGRALVTLVTGTNAGAATVTASFSLDNDIITDSFNAEVAGD
APGGNGEANSLSIQLTNSLTGLSTTNISANQPAKVTVTLVDKDSIPLSGKVVSFASSLGN
FLPSKGTALTDSIGRASITLTAGSIEGAGEITATYGTAKAIIGFATAGDEIDPVEASPEI
TFDIYNCNGVAAWDKTLKNFEVCQPTDNITNDKPGIIGAKVTRSGSTQPLQQVLVTAATT
LGAISPNSGTAITNADGKAILDLYANGSVGAGEVSLKVKDVTSTKAFEIGRVNISLKLET
SLGTNLLPAGGSTILDVTVLNPDGSLATGQPFTLVFTSECQASNKAIIDSPVITNGGKGY
ATYRSTGCETQDTVSVSAITGGGSVSSTAVINIDSIKVGALQYVSANPTLLALQGTGGIA
GAGSRSETSVVTFKLLDETAAPAGQERVCFELSTEVGGISLSPAPLAQDYLDCPNFPKPN
TSNYPVDLNAPNKYAVAVTDSAGLASVIVRSGDRATPVKVFALWAGSTAAGHNGVISNVS
DQLAITTGLADANSFSVSASTFNPEGWDYDNELVDINVLAADHFNNMVPAGTVIVFTAEG
GAIPGSCTTGGLTNPDGACSVQWRSQNPRPFDTTLVKCPESFNGDFNPPCMGTLKSQFDS
GKNSLLPEPRPGRATITAYAIGEESFVDLNGNGLFDFVDTNGDGVIEIDKGETEPFTDIS
EAFTDHNEDGFYRKISQSSSLADLLIQPAGAVNEEFVDYNSDGKFNKADEKYTGLLCASG
SGLACSDTGLDDNRAQLNIFKNIPIVMSGSTPMIRLVSIDGDTMTAVSEIDLIDRTDPTK
PVAKGPQTVYLFVSDVNNNTLPFETKISTSIDNGKLIVPVGGSYSIASNASNKPLVYAFT
IGQEDKPNQKLSGALVITVKTPKGSPVSVAVNITDGG