Protein Info for SO1842 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 143 to 173 (31 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details PF14351: DUF4401" amino acids 16 to 228 (213 residues), 69.9 bits, see alignment E=1.3e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1842)

Predicted SEED Role

"FIG01065933: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>SO1842 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MIWYLCMSALFLLLWGIIKHAVAQWVFAFSLCACLTGLLAEWHLLNLTPTLLVLLLSVVL
LNIHRTGYHYQRARMLVFGAATLLLTIQLMRVFSMDRIFEELFVSSWQSGMTAIHLIVVF
SICGFLIFSLFKQWHTQPSSPAVLFTFLGLVLVTALSLPMQGLSTAVLLILLGHYTHEVW
LKGIGIGSGLVFVSGYYYSLETTLMLKSLYLMGLGLLLLCARVVMWRYFPMTETSAELKE
QA