Protein Info for SO1815 in Shewanella oneidensis MR-1

Annotation: histone deacetylase/AcuC/AphA family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF00850: Hist_deacetyl" amino acids 19 to 286 (268 residues), 179 bits, see alignment E=7e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1815)

Predicted SEED Role

"Histone deacetylase/AcuC/AphA family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFZ9 at UniProt or InterPro

Protein Sequence (304 amino acids)

>SO1815 histone deacetylase/AcuC/AphA family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MIPLVYHASYSKLALPIHHRFPTTKYAHLYQYLLDNQLATPTQFHTPTPMTAEEIMQVHH
RDYVEQFIDGTLATSALRRIGFPWSEALVERTLHSLAGTSLTAALALQTGIALHLTGGYH
HAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQGDGTATLSQLHQGIISCSI
HCKDNFPSRKQHSHYDIELVKGTDDSAYLDTVEQTLELLIRLHQPDLILYDAGVDIHQDD
DLGHLQISQQGLYQRDVTVLSMARAANIPVAAVIGGGYSRDALQLSQRHSQLFIAANHLW
LQTQ