Protein Info for SO1651 in Shewanella oneidensis MR-1

Annotation: Snf2 family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1070 PF04851: ResIII" amino acids 605 to 763 (159 residues), 34.4 bits, see alignment E=3.1e-12 PF00176: SNF2-rel_dom" amino acids 609 to 892 (284 residues), 236.4 bits, see alignment E=5.5e-74 PF00271: Helicase_C" amino acids 906 to 1015 (110 residues), 81.8 bits, see alignment E=6.6e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1651)

Predicted SEED Role

"COG0553: Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGF3 at UniProt or InterPro

Protein Sequence (1070 amino acids)

>SO1651 Snf2 family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MRARDYVMQGRVLSAKANADFRHIEGSVVGSETSPYRQDIRLVSVNHKLIMNGFCSCPAT
GHCKHMAAVLYSLLTDKTVEDQRIVQWLHLLDDADDPRLNDVESLYDDRVLYILSKDNNG
VFIELRRGKLGKKGGYNKGSKIALSDVQYYMPAWIGAEDVLIINLIMSTRRHGASRLYLK
AQLGAVALEKMLATERCFWEESRLALTAGDAITPQFSWQDIDSEHKQMRLVLPKRDNWEL
VPTEPAYYIELDYFQIGLIDTDISIEKLRLLSQMPPVPRTQVEVVSHKLIKHFSARTVPL
PSAINFVELRDKLRVRLSLNMLSAASTQANATLPNTILPNTTQLKTTTLHAQAITISQPY
VTLAFIYGDVVLSGNAAKEALTLVTQGGTTYQINRALDEEQVAVETLQTLGFSRFIFDIG
SLSSHWRLGALPDGIREWLQFIEEDVPRLQAQGVEVLLAPEFSLKVVDTALTVELDDSKE
GWFSLSLHADINGQRLPMLPLVATWLKQHGEPADDAELLLPSPNGEWLKIKASVIKPLMS
IILELFEQHRGNSIALPKYRAHLLNELAQSDISLLNGERVRQLAAKLEQFTGVVAVTAPT
QLQAELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQKQLKSAAGPHLP
SLIICPTSLVGNWAKEAAKFAPSLTLAVIHGAQRGPLLARLSEFDVVVTTYPLMVRDNDY
YQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLP
GLLGTTAYFNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTELPPKTEIYQSLE
LEKDQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQK
VKNNAKLNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQV
QIDKFQEGDTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPV
FVYKLIAEGTVEEKIQEMQQHKQGLADSILEGKGNGAWQGSADELLSLFH