Protein Info for SO1605 in Shewanella oneidensis MR-1

Annotation: lipoprotein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1605)

Predicted SEED Role

"Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGJ7 at UniProt or InterPro

Protein Sequence (191 amino acids)

>SO1605 lipoprotein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MTKRNCFSRAPFLPAGLISVTAVVLLSGCGYFGGDEKQQLEQAWLAQDPQLQQVVEQIRS
RGLDVVAQSAAAGTVSACVTEKLTQDPLGKLVNVEGALVESAKVAELLGDLQKLMEQEVS
FDQVASLLQKGADAAAYAKNLIDQQGLEQAIQSLKQMALASEQFAQQDLGAHFQQLLLEC
KASPPATTPAN