Protein Info for SO1599 in Shewanella oneidensis MR-1

Annotation: multi-domain beta-ketoacyl synthase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1963 transmembrane" amino acids 857 to 872 (16 residues), see Phobius details PF00109: ketoacyl-synt" amino acids 30 to 306 (277 residues), 129.8 bits, see alignment E=2.1e-41 amino acids 506 to 772 (267 residues), 65.2 bits, see alignment E=1.1e-21 PF02801: Ketoacyl-synt_C" amino acids 314 to 431 (118 residues), 115.3 bits, see alignment 2.4e-37 PF07977: FabA" amino acids 1368 to 1507 (140 residues), 132.8 bits, see alignment 9.8e-43 amino acids 1820 to 1953 (134 residues), 132.8 bits, see alignment 1e-42

Best Hits

Predicted SEED Role

"omega-3 polyunsaturated fatty acid synthase subunit, PfaC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGK2 at UniProt or InterPro

Protein Sequence (1963 amino acids)

>SO1599 multi-domain beta-ketoacyl synthase (NCBI ptt file) (Shewanella oneidensis MR-1)
MSSQMHTHPTLQDSAAVPNDQRQTLKAMPKIAIVGLAVQYPDADTPEQFWQNLLDKKDSR
SQIDAAKLNANPADYQGIQGQADRFYCDKGGYIRNFRFDPQGYQLLPATFAGLDESFLWA
LDCSKKALLNAGVDLTAPLLERTGIVMGTLSFPTARSNELFLPIYHQAVEKALKTKLNQP
QFALAPFANASIAGSQLAANGVIAHTASKLLSDALGLGGAQLSLDAACASSVYALKLACD
YLTTGKADMMLAGAVSGADPFFINMGFSIFHAYPDHGISAPFDSNSKGLFAGEGAGVLVL
KRLEDAERDGDNIYAVVSGIGLSNDGKGQFVLSPNSKGQVQAFERAYAAANTHPSNIEVI
ECHATGTPLGDKVELTSMERFFEDKLDGTKAPLIGSAKSNLGHLLTAAGMPGIMKMIFAM
RSGHLPPSINLTAPISSPKGLFSVNNLPTQRQAWPDKAGNDRRHAGVSVFGFGGCNAHLL
LESYQPTAHSAEKQANKPVYQQQALTVIGMASHFGPLASINALDKALIAQTDAFIPLPPK
RWKGLDKHPDILQQFGLNRAPKGAYIEQFDFDFLRFKVPPNEDDRLISQQLLLIKVADEA
IRDAKLTAGSKVAVLVAMETELELHQFRGRVNLHTQLADSLKKQGVHLSNDEYLALEAIA
MDSVLDAAKLNQYTSFIGNIMASRIASLWDFNGPAFTISAAEQSVARCIDVAQNLLSKEA
LDGVVIAAVDLSGSVEQVILKNAQVAVDLDANSANPQWKVGEGAGAIVLTNQQASNSQQA
GYGQIRGQAFGTNHQLPKLLDSLITETAIANPSMPTAIHMIEQCIAPEEQLPAEHLLAQL
NLLGTSCNRVANTLGHNFAAAGMASLLSALLSLKNRSANSDKNAEKQALVSTQSQGVSSL
LLLSQTATQAAQLELRLAQDLTLSEQKHLIKPVTLGGRDIYQHIVDTPLPALAAIQGKMR
QLQPLASQATQTKPAVGAALDITAENATPLAAESGMSSNAPLQFETTASAQDSAALLQNQ
QLAREAHLAFLQSREQGLKLADALLKAQLSQTTQMGAVAAHVATSANVAETKAQQAVSIP
ELMPNHAPNHARVPPYTPPIPAAKPCIWNYQDLVEYAEGDIAKVFGADYAIIDSYARRVR
LPTSDYLLVSRVTKLNAQMNRYQPSSMTTEYDIPVDAPFLVDGQIPWAVAVESGQCDLML
ISYLGIDFENKGERVYRLLDCTLTFLGDLPRGGDTLRYDISINHFARNGDTLLFFFSYEC
FVGDKLILKMDGGCAGFFTDKELADGKGVIRTEVEIKVREQAQIALANEYTRNGNKPRFT
PLLNCAQTAFSYGQIHRLLSADIGGCFGGEHAAHQAKFGLQPSLCFASEKFLMIEQVSKL
EVHGGAWGLGLIEGHKQLAPDHWYFPCHFKGDQVMAGSLMAEGCGQLLQFFMLHIGMHAN
TQAGGVTNGRFQPLENASQKVRCRGQVLPQSGTLTYRMEVTEIGMSPRPYAKANIDILLN
GKVVVDFQNLGVMIKEEADCTRYSQSHSSQGNHTQAANIESLAEQAPLMAQIPDVAAPVN
KGVVPLKHVSAPIAPAGSKYANRVPDTLPFTPYHLFEFATGDIENCFGPDFSIYRGLIPP
RTPCGDLQLTTRVVAIEGKRGELKKPSTCIAEYEVPSNAWYYRKTSHPSVMPYSVLMEIS
LQPNGFISGYMGTTLGFPGQELFFRNLDGSGKLLREVDLRGKTIVNDSRLLSTVIAGSNI
IQNFSFELSCDGEPFYRGNAVFGYFKADALKNQLGIDNGKITQAWHLERGIKADCQINLL
DKNGRSFVAPLGKPHYRLAGGQLNFIDKAEIVKTGGKKGLGYLYAERTIDPSDWFFQFHF
HQDPVMPGSLGVEAIIELLQTYAIDQDLGAGFNNPKFGQILSEIKWKYRGQINPLNKQMS
LDVHITSIEDKDGKRIIKGDANLSKDGLRIYEVTDIAICIEEA