Protein Info for SO1571 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1041 PF06314: ADC" amino acids 89 to 147 (59 residues), 29.9 bits, see alignment 4e-11 PF13450: NAD_binding_8" amino acids 327 to 399 (73 residues), 34.4 bits, see alignment 2.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1571)

Predicted SEED Role

"FIG01058309: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGM9 at UniProt or InterPro

Protein Sequence (1041 amino acids)

>SO1571 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MEKQRPDFIYPQGSMLMHSPLVLNKADMYGFFLKGKLANLQRSIDNTLNQVAGSAMYFKV
LSPYVLTTFTQIEKAYSDYPTDRAKGWIQETDIITWVMVGRQDNSSSTKISHVYFQPLHI
WVNDAMALINGRELFGYPKYLCEYTMPAAGQPLTRLSLAAKSFLHFSPDTELAMHPLLEV
NCNAKPEAQLSTVEAITQTWKLFKEQTDFIPELDKLGEEQLFHLLFKPAIDQVFLKQFPD
ASGQKAVYQAITASPAKVNKVHSVALLENDFVATLFDNASFPLKDTLGVELGEQHVLLPY
HVNFDFEVPPGEVLVDNSEIKKQKIAILGGGVAAMTAACYLTDKPGWQNQYEIDIYQLGW
RIGGKGASGRNAAMGQRIEEHGLHIWFGFYQNAFALMRKAYEELDRPAQAPLATFLDAFK
PHHFIVLQEEINGRSVSWPITFPSLPGTPGDGTETLTFWKVVKAAFAWIKEWLKDMDTLL
EADEKAMETPKNWLDTRWFEQLKDKLEDSVEDAMESLDALGDKLECHFNQMIGRECDENV
HSESDDGLVESAVDALHQRLVKRFTDHLDTNDELRHLYIAVDLGLTILKGMFVDNVFEKG
FDAINDYDYREWLTKHGASQKYTVDSAPVRGFYDLVFAYEKGNFDKPNVEAGTIIRSMLR
IALCYQGGIMWKMQAGMGDVVFTPYYEVLKRRGVNFHFFNRVDNLECRNNSIQAIEITEQ
IALNPSVENYNPLVDVKGLACWPSTPNYEQLNAAQAALLKAHDINLEHFWSDWDNLYEAQ
FGQALPKKRLVKGVDFDKVIFGLSIGSVPHVASEVMAQSPALKTCVDKVQAVATQAYQLW
MDQDLNGIGWPNYSEDSEQPVLSGFTEPFDTWASMDQLLDKEDWRGTEPKNASYFCSALP
VDVYPPHTDVGFQQRKTAEAKAGAIHQLNTEIHKLWQHVGDTFPWEWLHDEQNRQGEARF
DSQYWRANVDPSERYVLSVKGSSQYRITTDGTGIDNLYMTGDWIKTGLNAGCVEAATMAG
MHTAKAICGHPAVIKGEKDFG