Protein Info for SO1561 in Shewanella oneidensis MR-1

Annotation: peptidase, M1 family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 598 PF17900: Peptidase_M1_N" amino acids 27 to 200 (174 residues), 56.1 bits, see alignment E=8.2e-19 PF01433: Peptidase_M1" amino acids 242 to 426 (185 residues), 145.2 bits, see alignment E=3.5e-46 PF09127: Leuk-A4-hydro_C" amino acids 486 to 595 (110 residues), 84.9 bits, see alignment E=6.4e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1561)

Predicted SEED Role

"Aminopeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGN8 at UniProt or InterPro

Protein Sequence (598 amino acids)

>SO1561 peptidase, M1 family (NCBI ptt file) (Shewanella oneidensis MR-1)
MPIAPTAWDLTRDYHSFANTDQVQVTHLSLTLTVDFEARTLLGEAVLSLRYIESQVAELW
LDTRGLAILSVMTEAQVPLEFSLEESNEILGQKLSIRLPQLQCERVCIRYLTSMQAQGLQ
WLAPEQTAGKQLPYLFSQSQPINARSWIPLQDTPKVRITFDAKVQVPKGMRAVMSAMNHP
ETPLEGTFQFEMEKPIPTHLLALAVGDLAFQVIGPRSGVYTEPCMLEAAATEFADTEHML
DVAQSLLGPYAWGRYDMIILPPSFPFGGMENPRLAFLTPTLIAGDKSLVSTVAHELAHSW
TGNLVSNATWRDLWLNEGFTTYFTNRIVEQVYGREQAELEWVIEFGRLQEEIAALPLHRQ
TLPANVQQADPNLAFNRFTYDKASMFVHDLERRLGRAEFDKFLFTYVQHFAFKAITTEMF
VKYAKAALVEAYPDKISEAELLEWIYGEGLPQGYVGPTSRSLDKVDDALNDFLQGKAAAL
LNVKSWRVHHWQYFLTQLPEVLSQVQLMDLDDSFKLTESNNAEIACDWFRVAIRNHYDPV
LPALSRYLQRIGRGKFVRPLYAELNIAGYHTELQSIYSSARSGYHPSIQVQLDRMFKS