Protein Info for SO1551 in Shewanella oneidensis MR-1

Annotation: GGDEF domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF20975: DGCcoil" amino acids 1 to 339 (339 residues), 491.4 bits, see alignment E=1.7e-151 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 355 to 516 (162 residues), 151.9 bits, see alignment E=6.9e-49 PF00990: GGDEF" amino acids 359 to 513 (155 residues), 153 bits, see alignment E=6.4e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1551)

Predicted SEED Role

"GGDEF domain family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGP7 at UniProt or InterPro

Protein Sequence (518 amino acids)

>SO1551 GGDEF domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKDSNATVTQLALLQQKLHSAKLALDEVNEDRNAKLQTLLQFIGHLSLACKGQNLELDNK
LAKLRHNLNTFDRVDEALPELVDVERLLKGQYHHVMVQLEESRAGLAQVIRQIQRVNSVP
EKLKKEINYFKQDLAKPFHTVWEYIPKVKQIIGFYDTILQQQFNGTEKLDVLPKHRQLAH
ELAQMISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLLLDNIAREKSASQEF
LYALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEAIIDTDDIVDLKARL
TEQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEANTYKERLFEQQKLNLLD
SLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDKTLQVIAM
ALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKNQRITVTVS
IGAARVMGNELIHETFERADAALYKAKHESRDRVVIDV