Protein Info for SO1495 in Shewanella oneidensis MR-1

Name: glgX
Annotation: glycogen operon protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 TIGR02100: glycogen debranching enzyme GlgX" amino acids 20 to 744 (725 residues), 1093.2 bits, see alignment E=0 PF02922: CBM_48" amino acids 24 to 112 (89 residues), 67.2 bits, see alignment E=1.3e-22 PF00128: Alpha-amylase" amino acids 206 to 301 (96 residues), 32.8 bits, see alignment E=6e-12

Best Hits

KEGG orthology group: K02438, glycogen operon protein GlgX [EC: 3.2.1.-] (inferred from 100% identity to son:SO_1495)

Predicted SEED Role

"Glycogen debranching enzyme (EC 3.2.1.-)" in subsystem Glycogen metabolism or Trehalose Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGU6 at UniProt or InterPro

Protein Sequence (750 amino acids)

>SO1495 glycogen operon protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MTSAALINSGGSLPYSVSAGKAFPLGATVDDGGVNFALFSAHATGVELCLFDAQGKVEIQ
RIALTEQTQQIWHLYVHGLCAGQLYGYRVYGPYEPQLGHRFNPHKLLLDPYARQLVGRYH
HHIANFGYELDNPNEDLSFSTLDNAAYMPKCKVVDIRPLLAAAESQAIRPLSPHRNPLPI
EQCIIYEMHLKGFTALHPEIDVPLRGTFAGLASKAAIDYLVKLGVNCVELLPIQAFFSEP
FLLEKQLSNYWGYNSIGFFAPEPSYLSSEDIIEFRTMVDALHGAGIEVILDVVYNHSAEG
SRLGPTFSFRGIDNLSYYRLHPNDKRFYINDTGCGNTLNLNHPRMLQLVLDSLRYWVKVM
GVDGFRFDLAASLGREAYGFDPGSGFFDALLQDPVLCRVKLIAEPWDIGPGGYQLGNFPV
AFSEWNDRYRDTMRRFWRGDHGMLPEFARRFHGSGDFFEHSGRPPAASINFLTSHDGFTL
KDLVSYCERHNWANGEENRDGHHANFSYHYGVEGASNDVSVLVLRARQQRNLLTTLFLSQ
GVPMLLSGDETGRTQGGNNNAYCQDNPMNWFDWSSEGMDKHLLSFTQQLIALRKRFPLLC
AKRFIHEQLVARSLESPSESPLGAAKFLTQPSARLDWFSRQGKPMTKSLWSESMCRSLCV
VLSGDLTAGIDVAGDNSFQALLLMVNADEHPLAFTPPVFEHLGPWQCLLHTQTEPQYLTP
TEPLDAQSSPTRYLLQDRSLMLFHADFIRN