Protein Info for SO1408 in Shewanella oneidensis MR-1

Annotation: helicase, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 987 PF13091: PLDc_2" amino acids 27 to 148 (122 residues), 27.5 bits, see alignment E=6.4e-10 PF04851: ResIII" amino acids 218 to 365 (148 residues), 136.8 bits, see alignment E=1.7e-43 PF00270: DEAD" amino acids 220 to 367 (148 residues), 39.7 bits, see alignment E=1.1e-13 PF00271: Helicase_C" amino acids 438 to 539 (102 residues), 46 bits, see alignment E=1.5e-15 PF00717: Peptidase_S24" amino acids 857 to 971 (115 residues), 27.3 bits, see alignment E=6.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1408)

Predicted SEED Role

"ATP-dependent RNA helicase YejH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EH23 at UniProt or InterPro

Protein Sequence (987 amino acids)

>SO1408 helicase, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MIEQQTSLYSGKKLSYGGANDPLLPRLIQAINHASEIEISVSFIQPSGLDLLFDPLLDAL
QSGASLKLLTSDYLCISHPVALRRLMLLAERGAQCKIFVCGQQSFHMKSYIFIRSEQDEI
IEGCAWIGSNNISKTALLHSHEWALRHDFELPLTSPAALEFAHIRKQFEAIFNHTESQVL
THVWIDSYLSRYQHTKQQRGIAAVSLYEEQEHIEPPTPNAVQMEALAALKASREQGFTRG
LVVLATGMGKTWLAAFDTLQTAAKKVLFVAHREEILIQAEKTFNQLVPEAKTGSYNGLNQ
DEKTDYLFASVATLGKLQHLQRFAADHFDYIVVDEFHHAAAKSYRQLLAYFRPQFLLGLT
ATPERSDQADILSLCDNNLVFERNLVHGIDGKLLVPFDYHGIYDQAVNYQDIPWRNGKFD
PDALDNALATQRRATHVLHHWQQSKQSRTLAFCVSKKHADFMAKYFTSKGINAIAVYSDS
KVRRNQALQWLAQGSIEVIFSVDLFNEGTDLPAIDTILMIRPTESKILFLQQLGRGLRLS
HQTQKQKLVVLDFIGNHESFLNRPTTLYNLGSLREVLRNLNQVNALPKGCHVNFDLELIE
FWQNLVKRLRFSVQEEYQQLANQLAHRPTASEFYHHGVEMNKVRQQAQSWFHLVASQEAE
PCFTDMVTRYGDFLLHGVETTTMTKSFKAILLEALLELDGLRNPPTLAALAERSHAVFCR
RPDLMAQELTQAAKQFKAQDKGWLTYWKNNPINAFTKANSKTPPWFQIDAKQRFVATFTI
DEADIELLHDWVQELVDLRLAQYVQRPQQKATVNTSNASTNNTRNTNTTAKPLAQVLPFE
STPSTEGTLLPFYPELKIACGHFKHGSAQNAEHYCVPSGYGLLDPKRHFVAPASGNSMNG
GKNPIQDGDLLLLEWVTPESAGSISNLTMAIETQDDTGDNQYLLRVVRKTAPNQYELHAQ
NPAYQTMLATDSMKTFARLKAVLESQD