Protein Info for SO1297 in Shewanella oneidensis MR-1

Name: gspA
Annotation: general secretion pathway protein a (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 transmembrane" amino acids 276 to 297 (22 residues), see Phobius details PF13191: AAA_16" amino acids 25 to 156 (132 residues), 49.9 bits, see alignment E=1.6e-16 PF13401: AAA_22" amino acids 42 to 171 (130 residues), 93.5 bits, see alignment E=4.2e-30 PF09848: SLFN-g3_helicase" amino acids 46 to 137 (92 residues), 21 bits, see alignment E=5.7e-08 PF21327: GspA_C39-like" amino acids 371 to 465 (95 residues), 32.6 bits, see alignment E=3e-11 PF01471: PG_binding_1" amino acids 483 to 536 (54 residues), 36.6 bits, see alignment 1.3e-12

Best Hits

KEGG orthology group: K02450, general secretion pathway protein A (inferred from 100% identity to son:SO_1297)

Predicted SEED Role

"General secretion pathway protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHD0 at UniProt or InterPro

Protein Sequence (554 amino acids)

>SO1297 general secretion pathway protein a (NCBI ptt file) (Shewanella oneidensis MR-1)
MYKAFYGLSDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS
RCLLGQLPDNTDTAFILNPSLTELELLATLCDELKISYGENPTLKQLTDHLSRFLLANHE
KGRKTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQLLLKRQELRQLA
QRITARYHLLPLNEDEITLYVLHRLQVAGRFEPLFTRKAIKVLHKYSGGIPRLINLLCER
ALMAGYAQSKVPIDHHMVRQAAAEVLGEEKPSQNKFLWPSAIAAALVLTFGVSYWLFTDH
AVVATVANENVTQPKQTVIAENAVQQSQTALTNTAPAITLAQTPAAPDPNLRVLQEAIKQ
SRQIDTAFAGLFNVWGKVPFKGLTACQSAFEQGLSCYQQQGNWMSLTRLNYPAVVYLVDD
NQQDFYGAVIAVDGEQLLMQLGEQQLWVERTWFNQHFSGTFEILWQAPNLPMMEISQKSS
PGQLQWLENALAHVAKRPSRRVSQFDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYL
SDQGPRLTDNGAQS