Protein Info for SO1264 in Shewanella oneidensis MR-1

Annotation: hypothetical oxidoreductase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 PF01266: DAO" amino acids 37 to 391 (355 residues), 217.9 bits, see alignment E=5.9e-68 PF13450: NAD_binding_8" amino acids 40 to 67 (28 residues), 23.5 bits, see alignment (E = 1.1e-08)

Best Hits

KEGG orthology group: K00540, [EC: 1.-.-.-] (inferred from 100% identity to son:SO_1264)

Predicted SEED Role

"Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.-.-.-

Use Curated BLAST to search for 1.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHF8 at UniProt or InterPro

Protein Sequence (435 amino acids)

>SO1264 hypothetical oxidoreductase (NCBI ptt file) (Shewanella oneidensis MR-1)
MPTKPPVHSEQYPHSYYLDTAKEIYAHPQLEGSITADVCIVGGGFSGINTAIELRQRGLS
VVLLEAKRMGWGASGRNGGELIRGIGHDPAQFINEIGQEGVSAIQQMGFEAVDIVRNRIQ
THQIDCDLQMGYCDLAVKPRHMIELQEEFESLKSLGYKHEIKLLAQSQLGNVIGSDFYQG
ALVDMGSGHLHPLNLALGEARVARELGAQLFEYSAAEKIIQGDKPKVLTAKGEVTCQYLV
LAGNAYIGHKLNSYIGGKVLPAGSYLLATEPLTQQQCKNIIPQNMAFADMRIALDYFHLS
ADRRLLFGGLCTYSGKDPKDIEAALRPNLEKVFPQLKGVRIDYEWGGMIGIGANRMPQIG
RLPDASNIFFAQAYAGHGVNATHMAAKLLAEAICQQAGHFDVFAKIKHMTFPGGPTFRSP
MLAAGMLYHRFKDLF