Protein Info for SO1225 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 792 PF07238: PilZ" amino acids 143 to 226 (84 residues), 38 bits, see alignment E=9.2e-14 amino acids 473 to 589 (117 residues), 45.3 bits, see alignment E=4.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1225)

Predicted SEED Role

"FIG01057676: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHJ6 at UniProt or InterPro

Protein Sequence (792 amino acids)

>SO1225 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSLDNHSALIEQLKPLLMEPNFQEIFQQLTADENNSTRFLLKMELSRLASPCTRIIDLRD
KSELLCTEVMLGQQHHFLDEPAKHSLQEAMSLYRNKYTMGVYEYVIAAHQLRRQKLRQVV
QQSDTVDPEPFMVPGVVLGSYFNRAEERMNYSIRIAVSQPGRPEILGITIDLSIGGARIR
LSANHPFDLDKPLKVKLLELSEEYYYPDLQLGVDYHIVDSETNGEFLWLRLKRIGGTDAL
GEMLGNLIRGYKLRYKLDVNDVLVTASGLGFERHYLPHLPHLPLFLNQQTQSISHMLLSR
DNQQIVHYFQDENDISQLPAMLTSSRLSALFSHPENPDYSLFFTFTYNAQGCLYFYSATL
AELKAKGLVPLFLGFASTKPSWRIFKLVSDKIYHAKGYRRATLPGDETQYSPLVEQQLSQ
FSHLLQLVDLTNEDERETYKAWQDDSNANTLKAFGQQRLTAHQIKPIPMQFSERRQEARF
AFKTLVNISQDNLKATGITLDISGRGMQLTLDNPTEFVVNKPLMICLPKLQTIAGKTQLD
NLPYRLVRTRKNGVTLHLAAVMGHTPHVGVEFLNKLIAHNKEKLEQLTENNSEANELADG
LKNILLRELHSVPYFVEKTTKSAQVTCLGVSTEHDEISSIFAAGSSDTLQYNLAPLLKDG
FCKRDILDPIRQMKPQQDMDFIEVFIQLTRQSRGRFHLKCIPATEVGDAQAKVAFITQSK
LTGRFMALRIYRGATEKPDMGYLRRELEYINIHANHRAKQLEEQLWRIIGVGELLDITQE
VELRYPALQKLP