Protein Info for SO_1140 in Shewanella oneidensis MR-1

Name: dapB
Annotation: dihydrodipicolinate reductase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01113: DapB_N
  • amino acids 5 to 128 (124 residues), 144.5 bits, E=1.7e-46
• TIGR00036: 4-hydroxy-tetrahydrodipicolinate reductase
  • amino acids 5 to 268 (264 residues), 353.8 bits, E=3.5e-110
• PF05173: DapB_C
  • amino acids 131 to 267 (137 residues), 163.8 bits, E=2.1e-52

Best Hits

Swiss-Prot: 100% identical to DAPB_SHEON: 4-hydroxy-tetrahydrodipicolinate reductase (dapB) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K00215, dihydrodipicolinate reductase [EC: 1.3.1.26] (inferred from 100% identity to son:SO_1140)

MetaCyc: 67% identical to 4-hydroxy-tetrahydrodipicolinate reductase (Escherichia coli K-12 substr. MG1655)
RXN-14014 [EC: 1.17.1.8]

Predicted SEED Role

"4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)" (EC 1.17.1.8)

MetaCyc Pathways

• aspartate superpathway (23/25 steps found)
• superpathway of L-lysine, L-threonine and L-methionine biosynthesis I (17/18 steps found)
• L-lysine biosynthesis I (9/9 steps found)
• superpathway of L-lysine, L-threonine and L-methionine biosynthesis II (13/15 steps found)
• L-lysine biosynthesis III (6/7 steps found)
• L-lysine biosynthesis VI (6/7 steps found)
• L-lysine biosynthesis II (6/9 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Lysine biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.17.1.8 or 1.3.1.26

Sequence Analysis Tools

See Q8EHS7 at UniProt or InterPro

Protein Sequence (270 amino acids)

>SO_1140 dihydrodipicolinate reductase (RefSeq) (Shewanella oneidensis MR-1)
MSGQVRVAIVGAGGRMGRTLIESAYHQEHIRLGAAIERPGSSLVGVDAGELAGVGKLNIM
IMDSLDYATDDFDVLIDFTAPEASIVHLDWCVRHKKAMVIGTTGFNHAQKEQINAFAEQT
PVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHRYKKDAPSGTALKMGEVIAKT
LGRDLEKCAVYGREGITGERDRETIGFATVRAGDLVGEHTAMFADIGERLEITHKASSRM
TFANGAMRAAHWLVEQKPGLYDMQQVLGLN