Protein Info for SO1064 in Shewanella oneidensis MR-1

Annotation: hypothetical WD domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00400: WD40" amino acids 73 to 97 (25 residues), 12.4 bits, see alignment (E = 2e-05) amino acids 148 to 180 (33 residues), 23.8 bits, see alignment 5.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1064)

Predicted SEED Role

"WD40 repeats containg secreted protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHZ0 at UniProt or InterPro

Protein Sequence (316 amino acids)

>SO1064 hypothetical WD domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKTLLLVICTMFLTACHPRADDIRELSKEPSYSASLSSDGTLAIIATQSQGVQCWDLIH
HTLKYQWIHGDLNTGVTSTAISPNGEFVASLSRDSVVLWTIADGKSLGWWSLPSSGESVA
VANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVAISADGRIALTGSNDMQAILW
QAQSGQPIHTWDLGSRVTKVALNDSGSLSFTNGSTNEAKIWDNASGKLLNQLEINRRQMT
FSAVRFTQQDNQLLTGTPAREVTLWQRNTGKPIAQWQIALTKNSQNRGAVVYSVAIRDTN
KIVSISSQGLVETWQQ