Protein Info for SO1049 in Shewanella oneidensis MR-1

Annotation: acetyltransferase, GNAT family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 PF13302: Acetyltransf_3" amino acids 11 to 137 (127 residues), 59.9 bits, see alignment E=4.6e-20 PF00583: Acetyltransf_1" amino acids 37 to 136 (100 residues), 35.4 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1049)

Predicted SEED Role

"Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EI04 at UniProt or InterPro

Protein Sequence (158 amino acids)

>SO1049 acetyltransferase, GNAT family (NCBI ptt file) (Shewanella oneidensis MR-1)
MDKQESVLNVSLRPITQSDLELIFAHQLDPVACQLAQFPPRDREAFYRHWQQNILGQEAV
LALGIEVEGQLVGNICHWHADGQALIGYWIDRAHWGRGIATLTLSVFLPLVRSRPLFAHV
AQHNVASQRVLLRHGFVKTGNVIQEEADTASLIELVLR