Protein Info for SO0945 in Shewanella oneidensis MR-1

Annotation: AcrB/AcrD/AcrF family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 459 to 483 (25 residues), see Phobius details amino acids 533 to 553 (21 residues), see Phobius details amino acids 862 to 883 (22 residues), see Phobius details amino acids 892 to 911 (20 residues), see Phobius details amino acids 917 to 942 (26 residues), see Phobius details amino acids 962 to 983 (22 residues), see Phobius details amino acids 995 to 1021 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1021 (1014 residues), 565.8 bits, see alignment E=8.4e-174

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0945)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EI98 at UniProt or InterPro

Protein Sequence (1067 amino acids)

>SO0945 AcrB/AcrD/AcrF family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MDTQKGIIAWFAHNSVAANLLMWIVLIGGLFSAVLINKEVYPPFELNLLNISVAYPGAAP
QEIEEGINIKIEEAIQDINGIKKVTSVAREGIGTISIEVEDGYDVQNLLDEAKLRLDAIS
TFPVNIEKPEIFKVEPENFVLWVSIYGEMSLHDMKELAKSVRDDLTQLPAVTRAKVTGVR
DYEIGIEVSEDKLREYGLTFSQVATAVQNSSIDLPGGSIRAEDGDILLRTKGQAYTGDDF
ANIVVTTRADGSRVMLPQVATIKDDFEERLEYTRFNGKPAAIIEVTSVNDQNALEIAAQV
KQYVEDRRATLPANAKLDTWGDMTHYLKDRLNMMLSNMFYGALLVFIILALFLDLRLAFW
VMMGIPVCFLGTMLLMPLEPFSMTINMMTLFAFILVLGIVVDDAIVIGESAYDEVERHGH
SIDNVIHGAQKVAMPATFGVLTTIAAFIPMLLVSGPMGVIWKSIGMIVILCLAFSLVESK
FILPAHLAHMKFKKPGESTGFFGRFREKFNNRVQHFIHHSYRNFLERCIRQRYNVLAIFI
GVLILSIALVLSGKVRWVFFPNLASDFIQVQLEMDEGSSEQNTLKVIQDIEDALYKMNAD
IAQKYGYEVVKHSFINMDSRTSAFIFAELVKGEARDIDADTISAAWRAQLPELLSVKKLD
LNGGRNMGSGGDISFRLSSNSLDELAAASKEIKQKLASYEGIYDIADNYSSGSSEIRLKI
RPEAEALGLTLSDLARQVRYGFYGYEAQRILRSKEEVKVMVRYPLEQRRTLGHLENMLIR
TPQGTAVPFSTVAEIEKGESFASITRVDGKRAISITANANKNIVEPSKVVNEIQETYLPQ
LQAKYPSIQTALDGGSLDEQNALVGLIQGFFFALFTIYALMAVPLKSYSQPLIIMSVIPF
GIIGAIFGHLIQGLSISVLSLCGIVALAGVVVNDSLILVDFVNRAREQGQSIRQAAVDSG
CYRFRAIILTSLTTFVGLAPIILERSLQAQVVIPMATSLAFGILFSTVVTLILVPLLYII
LDDAKRLGSRLYHWWWRPKNTQEMPLHTNETHRVSLDAVNEPDYKRD