Protein Info for SO0839 in Shewanella oneidensis MR-1

Annotation: transcriptional regulator, LysR family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00126: HTH_1" amino acids 5 to 62 (58 residues), 65.7 bits, see alignment E=2.9e-22 PF03466: LysR_substrate" amino acids 88 to 292 (205 residues), 135.5 bits, see alignment E=1.8e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0839)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EIK0 at UniProt or InterPro

Protein Sequence (303 amino acids)

>SO0839 transcriptional regulator, LysR family (NCBI ptt file) (Shewanella oneidensis MR-1)
MPDLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQ
VGALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPN
VELDVQFTDNDIGLVGEGYDIAIKYGPLQSSDLVARLLFERQPILVASPGYLKTRGTPAT
PKELSDHSGILLGTSRSAPIWPLGKGTRKTMVSFQRKVRVNSPIMVKQLALDDFGIAMLS
NSACKTELANGQLVPILQEWPMEPFKVYGVYSSRRQLATNISAFLDFFVKRFSSQESLQS
LMG