Protein Info for SO0708 in Shewanella oneidensis MR-1
Annotation: transposase, mutator family (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 52% identical to TRA3_RHIME: Transposase for insertion sequence element ISRM3 (R00164) from Rhizobium meliloti (strain 1021)
KEGG orthology group: None (inferred from 100% identity to son:SO_0708)Predicted SEED Role
"transposase, mutator family"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8EIX1 at UniProt or InterPro
Protein Sequence (403 amino acids)
>SO0708 transposase, mutator family (NCBI ptt file) (Shewanella oneidensis MR-1) MPVSDQLIDQLLADYESPQDLLGEQGILRQLTKKLAERALEAEMELHLGYAKHDAAGFNT GNSRNGKSRKSVRSIHGDIELETPRDRNGSFEPKLIKKGEKQLGGFDERIVSLYARGMST RDIQAHFEETYGVEVSPTFISQITNAVLDEVKAWQLRPLAPVYPIVYLDCLVVRSRDSGS IQNKSVYLALGVNTDGEKELLGLWIAQTEGAKFWLSVMNELKNRGVEDIFIACVDGLKGF PDAIEAVYPKTQVQLCIVHQIRNSLRFVSWKERKAVAADLKTIYGAATLQQAELALEQFA KTWDKQHPSISKSWRENWTRLSVFFDYPPEIRKVIYTTNAIESLNASLRQVTKTRRSFPS DDAVLKLLYLALHQIAKKWTMPLRDWKPAMTQFMIMYSDRVSL