Protein Info for SO0675 in Shewanella oneidensis MR-1

Annotation: prophage MuSo1, major head subunit, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF10124: Mu-like_gpT" amino acids 9 to 306 (298 residues), 405.7 bits, see alignment E=6e-126

Best Hits

Swiss-Prot: 50% identical to CAPSD_BPMU: Major capsid protein (T) from Escherichia phage Mu

KEGG orthology group: None (inferred from 100% identity to son:SO_0675)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJ00 at UniProt or InterPro

Protein Sequence (306 amino acids)

>SO0675 prophage MuSo1, major head subunit, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MAAINAAVLQALRTMVRSEFQNALTKTEPLYLKIASVVPSNTKSNTYGWLGSMPTMREWI
GARVINSIKEHGYSITNRTFETTIGICRDDVEDEVIGTYKPMVQALAQEGEEFPDDLVFE
LLADGFSTLCYDGQNFFDTDHPVNEKHDGTGDNVSVANMALDAAYTGEPWFLLDTTRPLK
PVIFQERRKLDLNTLFNPTDPAVWTNNEFQFGTDMRCEAGFGFWQMAFANKRALNADNLW
DTIEKMKAFKRDGGKKLKIRPSLLVVPSSLEQAATKLLTRELIDENGTTVENELKGKVEL
LVVPQL